__iECx6__O2Stex in iEC1368_DH5a
- superoxide anion transport via diffusion (extracellular to periplasm)
- __iECx6__o2s_e:0 ⇌ __iECx6__o2s_p:0
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: __iECx6__O2Stex
Reaction Participants
| Stoich. | BiGG ID | Name | Reference | x [side] | Compartment | |
|---|---|---|---|---|---|---|
 |
-1 | __iECx6__o2s_e:0 | Superoxide anion | - | - | - |
 |
1 | __iECx6__o2s_p:0 | Superoxide anion | - | - | - |
Gene Reaction Rule
locus_4006 or locus_1000 or locus_4404 or locus_224
| BiGG ID | Name | |
|---|---|---|
 |
locus_224 | OmpF |
|
locus_1000 | OmpC |
|
locus_4006 | OmpN |
|
locus_4404 | PhoE |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (8.33% of all oxygen-containing reactions): __iECx6__MOX, O2tex, __iECx6__O2Stex, EX_o2_e, O2tpp
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.