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  5. __LactoPanGEM__METSRabc
__LactoPanGEM__METSRabc in GCF_018552295_1
  • L methionine R oxide transport via ABC system
  • h2o_c:0 + __LactoPanGEM__atp_c:0 → __LactoPanGEM__adp_c:0 + __LactoPanGEM__h_c:0 + __LactoPanGEM__metox__R_c:0 + __LactoPanGEM__pi_c:0
  • Bounds: (0.0, 1000.0)
  • Universal Reaction: __LactoPanGEM__METSRabc
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 h2o_c:0 water CHEBI:15377 - -
-1 __LactoPanGEM__atp_c:0 ATP - - -
1 __LactoPanGEM__adp_c:0 ADP - - -
1 __LactoPanGEM__h_c:0 H+ - - -
1 __LactoPanGEM__metox__R_c:0 L-methionine R-oxide - - -
1 __LactoPanGEM__pi_c:0 Phosphate - - -
Gene Reaction Rule
AFINNJNH_14820 or AFINNJNH_19760 or AFINNJNH_14810 or AFINNJNH_14800 or AFINNJNH_03020 or AFINNJNH_19780 or AFINNJNH_03030 or AFINNJNH_19770 or AFINNJNH_21350
BiGG ID Name
AFINNJNH_19770 None
AFINNJNH_21350 None
AFINNJNH_14820 None
AFINNJNH_19760 None
AFINNJNH_14810 None
AFINNJNH_14800 None
AFINNJNH_03020 None
AFINNJNH_19780 None
AFINNJNH_03030 None
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

A total of 318 (27.23%) reactions are mass unbalanced with at least one of the metabolites not having a formula or the overall mass not equal to 0: __LactoPanGEM__ADK1, __LactoPanGEM__NMNAT, __LactoPanGEM__PHETRS, __LactoPanGEM__kaasIII, __LactoPanGEM__HEDESAT, ...

This will exclude biomass, exchange and demand reactions as they are unbalanced by definition. It will also fail all reactions where at least one metabolite does not have a formula defined. In steady state, for each metabolite the sum of influx equals the sum of efflux. Hence the net masses of both sides of any model reaction have to be equal. Reactions where at least one metabolite does not have a formula are not considered to be balanced, even though the remaining metabolites participating in the reaction might be. Implementation: For each reaction that isn't a boundary or biomass reaction check if each metabolite has a non-zero elements attribute and if so calculate if the overall element balance of reactants and products is equal to zero.