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  5. __LactoPanGEM__METSRabc
__LactoPanGEM__METSRabc in GCF_003702625_1
  • L methionine R oxide transport via ABC system
  • h2o_c:0 + __LactoPanGEM__atp_c:0 → __LactoPanGEM__adp_c:0 + __LactoPanGEM__h_c:0 + __LactoPanGEM__metox__R_c:0 + __LactoPanGEM__pi_c:0
  • Bounds: (0.0, 1000.0)
  • Universal Reaction: __LactoPanGEM__METSRabc
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 h2o_c:0 water CHEBI:15377 - -
-1 __LactoPanGEM__atp_c:0 ATP - - -
1 __LactoPanGEM__adp_c:0 ADP - - -
1 __LactoPanGEM__h_c:0 H+ - - -
1 __LactoPanGEM__metox__R_c:0 L-methionine R-oxide - - -
1 __LactoPanGEM__pi_c:0 Phosphate - - -
Gene Reaction Rule
PHEBOHHK_13150 or PHEBOHHK_29490 or PHEBOHHK_13160 or PHEBOHHK_20680 or PHEBOHHK_33870 or PHEBOHHK_27940 or PHEBOHHK_20690 or PHEBOHHK_27950 or PHEBOHHK_13170 or PHEBOHHK_33880 or PHEBOHHK_27930
BiGG ID Name
PHEBOHHK_33870 None
PHEBOHHK_27940 None
PHEBOHHK_20690 None
PHEBOHHK_27950 None
PHEBOHHK_13170 None
PHEBOHHK_33880 None
PHEBOHHK_27930 None
PHEBOHHK_13150 None
PHEBOHHK_29490 None
PHEBOHHK_13160 None
PHEBOHHK_20680 None
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

A total of 311 (26.24%) reactions are mass unbalanced with at least one of the metabolites not having a formula or the overall mass not equal to 0: __LactoPanGEM__AGPAT120, __LactoPanGEM__SPTETDH, __LactoPanGEM__G3PAT180, __LactoPanGEM__NNAT, __LactoPanGEM__RNAS_LBR, ...

This will exclude biomass, exchange and demand reactions as they are unbalanced by definition. It will also fail all reactions where at least one metabolite does not have a formula defined. In steady state, for each metabolite the sum of influx equals the sum of efflux. Hence the net masses of both sides of any model reaction have to be equal. Reactions where at least one metabolite does not have a formula are not considered to be balanced, even though the remaining metabolites participating in the reaction might be. Implementation: For each reaction that isn't a boundary or biomass reaction check if each metabolite has a non-zero elements attribute and if so calculate if the overall element balance of reactants and products is equal to zero.