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  5. __LactoPanGEM__METSRabc
__LactoPanGEM__METSRabc in GCF_001633325_1
  • L methionine R oxide transport via ABC system
  • h2o_c:0 + __LactoPanGEM__atp_c:0 → __LactoPanGEM__adp_c:0 + __LactoPanGEM__h_c:0 + __LactoPanGEM__metox__R_c:0 + __LactoPanGEM__pi_c:0
  • Bounds: (0.0, 1000.0)
  • Universal Reaction: __LactoPanGEM__METSRabc
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 h2o_c:0 water CHEBI:15377 - -
-1 __LactoPanGEM__atp_c:0 ATP - - -
1 __LactoPanGEM__adp_c:0 ADP - - -
1 __LactoPanGEM__h_c:0 H+ - - -
1 __LactoPanGEM__metox__R_c:0 L-methionine R-oxide - - -
1 __LactoPanGEM__pi_c:0 Phosphate - - -
Gene Reaction Rule
DHPPELPL_25920 or DHPPELPL_10410 or DHPPELPL_10420 or DHPPELPL_03230 or DHPPELPL_03240 or DHPPELPL_25910 or DHPPELPL_03250 or DHPPELPL_18000 or DHPPELPL_25930
BiGG ID Name
DHPPELPL_03250 None
DHPPELPL_18000 None
DHPPELPL_25930 None
DHPPELPL_25920 None
DHPPELPL_10410 None
DHPPELPL_10420 None
DHPPELPL_03230 None
DHPPELPL_03240 None
DHPPELPL_25910 None
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

A total of 324 (27.91%) reactions are mass unbalanced with at least one of the metabolites not having a formula or the overall mass not equal to 0: __LactoPanGEM__GTPDPK, __LactoPanGEM__GTPCII2, __LactoPanGEM__METACH, __LactoPanGEM__GALU:2, __LactoPanGEM__GALT1, ...

This will exclude biomass, exchange and demand reactions as they are unbalanced by definition. It will also fail all reactions where at least one metabolite does not have a formula defined. In steady state, for each metabolite the sum of influx equals the sum of efflux. Hence the net masses of both sides of any model reaction have to be equal. Reactions where at least one metabolite does not have a formula are not considered to be balanced, even though the remaining metabolites participating in the reaction might be. Implementation: For each reaction that isn't a boundary or biomass reaction check if each metabolite has a non-zero elements attribute and if so calculate if the overall element balance of reactants and products is equal to zero.