1. Home
  2. Models
  3. GCF_001188985_1
  4. Reactions
  5. __LactoPanGEM__METSRabc
__LactoPanGEM__METSRabc in GCF_001188985_1
  • L methionine R oxide transport via ABC system
  • h2o_c:0 + __LactoPanGEM__atp_c:0 → __LactoPanGEM__adp_c:0 + __LactoPanGEM__h_c:0 + __LactoPanGEM__metox__R_c:0 + __LactoPanGEM__pi_c:0
  • Bounds: (0.0, 1000.0)
  • Universal Reaction: __LactoPanGEM__METSRabc
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 h2o_c:0 water CHEBI:15377 - -
-1 __LactoPanGEM__atp_c:0 ATP - - -
1 __LactoPanGEM__adp_c:0 ADP - - -
1 __LactoPanGEM__h_c:0 H+ - - -
1 __LactoPanGEM__metox__R_c:0 L-methionine R-oxide - - -
1 __LactoPanGEM__pi_c:0 Phosphate - - -
Gene Reaction Rule
PBDBAGGM_02010 or PBDBAGGM_14360 or PBDBAGGM_23600 or PBDBAGGM_23610 or PBDBAGGM_14340 or PBDBAGGM_14350 or PBDBAGGM_02000 or PBDBAGGM_25130 or PBDBAGGM_23620
BiGG ID Name
PBDBAGGM_14360 None
PBDBAGGM_23610 None
PBDBAGGM_14350 None
PBDBAGGM_23620 None
PBDBAGGM_02010 None
PBDBAGGM_02000 None
PBDBAGGM_23600 None
PBDBAGGM_14340 None
PBDBAGGM_25130 None
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

A total of 313 (26.62%) reactions are mass unbalanced with at least one of the metabolites not having a formula or the overall mass not equal to 0: __LactoPanGEM__2OXOADOXm, __LactoPanGEM__12MTRDACPTr, __LactoPanGEM__PGPP140, __LactoPanGEM__14MPDACPTr, __LactoPanGEM__GMPS2, ...

This will exclude biomass, exchange and demand reactions as they are unbalanced by definition. It will also fail all reactions where at least one metabolite does not have a formula defined. In steady state, for each metabolite the sum of influx equals the sum of efflux. Hence the net masses of both sides of any model reaction have to be equal. Reactions where at least one metabolite does not have a formula are not considered to be balanced, even though the remaining metabolites participating in the reaction might be. Implementation: For each reaction that isn't a boundary or biomass reaction check if each metabolite has a non-zero elements attribute and if so calculate if the overall element balance of reactants and products is equal to zero.