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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
ACALDtpp acetaldehyde reversible transport (periplasm) GAP
ACONIs aconitate isomerase (spontaneous) GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
AOBUTDs L-2-amino-3-oxobutanoate decarboxylation (spontaneous) GAP
__Ecoli_panGEMs__ARBTNexs Aerobactin Fe-loading reaction (spontaneous) GAP
ARGSS argininosuccinate synthase GAP
ATPHs ATP amine hydrolysis (spontaneous) GAP
CBMD carbamate deaminase GAP
CHOLATEtpp cholate transport via proton antiport GAP
CO2tpp CO2 transporter via diffusion (periplasm) GAP
__Ecoli_panGEMs__CPGNexs Coprogen Fe-loading reaction (spontaneaous) GAP
DATPHs dATP amine hydrolysis (spontaneous) GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHGLYH Dehydroglycine Hydratase GAP
DHPTDCs2 4,5-dihydroxy-2,3-pentanedione cyclization (spontaneous) GAP
DMSOtpp Dimethyl sulfoxide transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
ETOHtrpp ethanol reversible transport via diffusion (periplasm) GAP
FALDtpp formaldehyde transport via diffusion (periplasm) GAP
FALGTHLs formaldehyde glutathione ligase (spontaneous) GAP
__Ecoli_panGEMs__FE3DCITexs Dicitrate Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FE3HOXexs Fe(III) hydroxamate Fe-loading reaction (spontaneaous) GAP
__Ecoli_panGEMs__FE3HOXtonex Fe(III)hydroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FECRMexs Ferrichrome Fe(III)-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FECRMtonex Ferrichrome transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FEENTERexs Enterobactin Fe(III) binding (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMexs Ferroxamine Fe3-loading reaction (spontaneous) GAP
__Ecoli_panGEMs__FEOXAMtonex Ferroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FESD1s Iron-sulfur cluster damage (peroxide, spontaneous) GAP
__Ecoli_panGEMs__FESD2s Iron-sulfur cluster damage (nitrous oxide, spontaneous) GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
G5SADs L-glutamate 5-semialdehyde dehydratase (spontaneous) GAP
GALCTNLt2pp L-galactonate transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLXCL glyoxalate carboligase GAP
GTPHs GTP amine hydrolysis (spontaneous) GAP
H2St1pp h2s transport (periplasm) GAP
H2tpp hydrogen transport diffusion (periplasm) GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT3 Heptosyltransferase III (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HPYRI hydroxypyruvate isomerase GAP
__Ecoli_panGEMs__LPADSS Lipid A disaccaride synthase GAP
LPLIPAL1A120pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C12:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A140pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A141pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C14:1) (periplasm) GAP
LPLIPAL1A160pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A161pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C16:1) (periplasm) GAP
LPLIPAL1A180pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1A181pp Lysophospholipase L1 (2-acylglycerophosphotidate, n-C18:1) (periplasm) GAP
LPLIPAL1E120pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C12:0) (periplasm) GAP
LPLIPAL1E140pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E141pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C14:1) (periplasm) GAP
LPLIPAL1E160pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E161pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C16:1) (periplasm) GAP
LPLIPAL1E180pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1E181pp Lysophospholipase L1 (2-acylglycerophosphoethanolamine, n-C18:1) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G120pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C12:0) (periplasm) GAP
LPLIPAL1G140pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G141pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C14:1) (periplasm) GAP
LPLIPAL1G160pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G161pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C16:1) (periplasm) GAP
LPLIPAL1G180pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:0) (periplasm) GAP
__Ecoli_panGEMs__LPLIPAL1G181pp Lysophospholipase L1 (2-acylglycerophosphoglycerol, n-C18:1) (periplasm) GAP
MANGLYCptspp 2-O-alpha-mannosyl-D-glycerate transport via PEP:Pyr PTS (periplasm) GAP
MANPGH 2-O-alpha-mannosyl-6-phosphate-D-glycerate hydrolase GAP
MEOHtrpp Methanol reversible transport via diffusion (periplasm) GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
__Ecoli_panGEMs__METGLCUR 1-O-Methyl-Beta-D-glucuronidase GAP
__Ecoli_panGEMs__METGLCURt2pp 1-O-methyl-Beta-D-glucuronate transport via proton symport (periplasm) GAP
METOX1s methionine oxidation (spontaneous) GAP
METOX2s methionine oxidation 2 (spontaneous) GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
MTHTHFSs (2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran synthesis (spontaneous) GAP
N2Otpp nitrious oxide transport (diffusion) GAP
NOtpp NO transport (diffusion) GAP
NOVBCNtex Novobiocin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
O2tpp o2 transport via diffusion (periplasm) GAP
__Ecoli_panGEMs__OGMEACPD 3-Oxo-glutaryl-[ACP] methyl ester dehydratase GAP
OMCDC 2-Oxo-4-methyl-3-carboxypentanoate decarboxylation GAP
__Ecoli_panGEMs__OPMEACPD 3-Oxo-pimeloyl-[ACP] methyl ester dehydratase GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
PEAMNOpp Phenethylamine oxidase GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
RFAMPtex Rifampin transport via diffusion (extracellular to periplasm) GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
SO2tpp SO2 transport via diffusion (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
__Ecoli_panGEMs__U23GAAT UDP-3-O-(3-hydroxymyristoyl)glucosamine acyltransferase GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
UDPGALM UDPgalactopyranose mutase GAP
UGLYCH Ureidoglycolate hydrolase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP