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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
23DOGULNt4pp Na+/ 2,3-Dioxo-L-gulonate symport (periplasm) GAP
3HPADHi 3-Hydroxypropanal Dehydrogenase GAP
3KGK 3-keto-L-gulonate kinase GAP
3OXCOAT 3-oxoadipyl-CoA thiolase GAP
3SLAR 3-sulfolactaldehyde reductase GAP
42A12BOOXpp 4-(2-Aminoethyl)-1,2-benzenediol:oxygen oxidoreductase(deaminating)(flavin-containing) GAP
4ABZGLUH p-aminobenzoyl-glutamate hydrolase GAP
4ABZGLUtr p-aminobenzoyl glutamate:H+ symporter GAP
4HTHRK 4-Hydroxy-L-threonine kinase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
6D6SPA 6-deoxy-6-sulfofructose-1-phosphate aldolase GAP
__Ecoli_panGEMs__AACPS1 Acyl-[acyl-carrier-protein] synthetase (n-C14:0) GAP
__Ecoli_panGEMs__AACPS2 Acyl-[acyl-carrier-protein] synthetase (n-C14:1) GAP
__Ecoli_panGEMs__AACPS3 Acyl-[acyl-carrier-protein] synthetase (n-C16:0) GAP
__Ecoli_panGEMs__AACPS4 Acyl-[acyl-carrier-protein] synthetase (n-C16:1) GAP
__Ecoli_panGEMs__AACPS5 Acyl-[acyl-carrier-protein] synthetase (n-C18:1) GAP
__Ecoli_panGEMs__AACPS6 Acyl-[acyl-carrier-protein] synthetase (n-C18:0) GAP
__Ecoli_panGEMs__AACPS7 Acyl-[acyl-carrier-protein] synthetase (n-C12:0) GAP
__Ecoli_panGEMs__AACPS8 Acyl-[acyl-carrier-protein] synthetase (n-C10:0) GAP
__Ecoli_panGEMs__AACPS9 Acyl-[acyl-carrier-protein] synthetase (n-C8:0) GAP
ABTA 4-aminobutyrate transaminase GAP
__Ecoli_panGEMs__ACMUMptspp N-acetylmuramate transport via PEP:Pyr PTS (periplasm) GAP
__Ecoli_panGEMs__ACOATA Acetyl-CoA ACP transacylase GAP
__Ecoli_panGEMs__ACPPAT120 Acyl-(acyl carrier protein):phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__ACPPAT140 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__ACPPAT141 Acyl-(acyl carrier protein):phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__ACPPAT160 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__ACPPAT161 Acyl-(acyl carrier protein):phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__ACPPAT180 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__ACPPAT181 Acyl-(acyl carrier protein):phosphate acyltransferase (C18:1) GAP
ACS acetyl-CoA synthetase GAP
AKGDH 2-Oxogluterate dehydrogenase GAP
ALAabcpp L-alanine transport via ABC system (periplasm) GAP
ALAALAabcpp D-alanyl-D-alanine (DalaDala) transport via ABC system (periplasm) GAP
ALAALAD D-alanine-D-alanine dipeptidase GAP
ALDD19xr aldehyde dehydrogenase (phenylacetaldehyde, NAD) GAP
AMANAPEr N-acetylmannosamine 6-phosphate epimerase GAP
AMANK N-acetyl-D-mannosamine kinase GAP
AMPNTAT aminoalkylphosphonate N-acetyltransferase GAP
__Ecoli_panGEMs__ARBTNabcpp Aerobactin transport via ABC system (periplasm) GAP
ARMEPNS ?-D-ribose 1-methylphosphonate 5-triphosphate synthase GAP
ASO3t8pp arsenite efflux via ATP hydrolysis (periplasm) GAP
__Ecoli_panGEMs__BMOCOS Bis-molybdenum cofactor synthase GAP
BPNT 3',5'-bisphosphate nucleotidase GAP
__Ecoli_panGEMs__BWCOS Tungsten bispterin cofactor synthase GAP
CGLYabcpp L-Cysteinylglycine (Cys-Gly) transport via ABC system (periplasm) GAP
CHLabcpp choline transport via ABC system (periplasm) GAP
CINNDO Cinnamate dioxygenase GAP
CITL Citrate lyase GAP
__Ecoli_panGEMs__CPGNabcpp Coprogen transport via ABC system (periplasm) GAP
CRNabcpp L-carnitine transport via ABC system (periplasm) GAP
CRNDabcpp D-carnitine transport via ABC system (periplasm) GAP
CTBTabcpp crotonobetaine transport via ABC system (periplasm) GAP
CURR NADPH-dependent curcumin reductase GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYSabc2pp L-cysteine export via ABC system (cytoplasm to periplasm) GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
__Ecoli_panGEMs__DAAD D-Amino acid dehydrogenase GAP
DCTPD dCTP deaminase GAP
DDCAtexi Fatty acid (dodecanoate) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
DDPGALA 2-dehydro-3-deoxy-6-phosphogalactonate aldolase GAP
DHACOAH 2,3-dehydroadipyl-CoA hydratase GAP
DHBD 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase GAP
__Ecoli_panGEMs__DHBSZ3FEabcpp 23dhbsz3 Fe III transport via ABC system periplasm GAP
DHCIND 2,3-dihydroxycinnamate dehydrogenase GAP
DHCURR NADPH-dependent dihydrocurcumin reductase GAP
DHNCOAS 1,4-dihydroxy-2-napthoyl-CoA synthase GAP
DHPPD 2,3-dihydroxyphenylpropionate dehydrogenase GAP
DHPStex 2,3-dihydroxypropane 1-sulfonate transport via diffusion GAP
DHPStr 2,3-dihydroxypropane 1-sulfonate transporter GAP
F6Pt6_2pp Fructose-6-phosphate transport via phosphate antiport (periplasm) GAP
__Ecoli_panGEMs__FADRx2 FAD reductase GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3HOXabcpp Ferric-dicitrate transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FECRMabcpp Ferrichrome transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEENTERabcpp Fe-enterobactin transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__FEOXAMabcpp Ferroxamine transport via ABC system (periplasm) GAP
FHL Formate-hydrogen lyase GAP
FRULYSDG Fructoselysine phosphate deglycase GAP
FRULYSE fructoselysine 3-epimerase GAP
FRULYSK Fructoselysine Kinase GAP
FRULYSt2pp Fructoselysine transport via proton symport (periplasm) GAP
__Ecoli_panGEMs__G3PAT120 Glycerol-3-phosphate acyltransferase (C12:0) GAP
__Ecoli_panGEMs__G3PAT140 Glycerol-3-phosphate acyltransferase (C14:0) GAP
__Ecoli_panGEMs__G3PAT141 Glycerol-3-phosphate acyltransferase (C14:1) GAP
__Ecoli_panGEMs__G3PAT160 Glycerol-3-phosphate acyltransferase (C16:0) GAP
__Ecoli_panGEMs__G3PAT161 Glycerol-3-phosphate acyltransferase (C16:1) GAP
__Ecoli_panGEMs__G3PAT180 Glycerol-3-phosphate acyltransferase (C18:0) GAP
__Ecoli_panGEMs__G3PAT181 Glycerol-3-phosphate acyltransferase (C18:1) GAP
G3PCabcpp sn-glycerol-3-phosphocholine transport via ABC system (periplasm) GAP
G3PD2 glycerol-3-phosphate dehydrogenase (NADP) GAP
G3PD5 glycerol-3-phosphate dehydrogenase (ubiquinone-8) GAP
G3PD6 glycerol-3-phosphate dehydrogenase (menaquinone-8) GAP
G3PD7 glycerol-3-phosphate dehydrogenase (demethylmenaquinone-8) GAP
G3PEabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PGabcpp sn-glycerol-3-phosphoglycerol transport via ABC system (periplasm) GAP
G3PIabcpp sn-glycerol-3-phosphoethanolamine transport via ABC system (periplasm) GAP
G3PSabcpp sn-glycerol-3-phosphoserine transport via ABC system (periplasm) GAP
G6Pt6_2pp Glucose-6-phosphate transport via phosphate antiport (periplasm) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GAM6Pt6_2pp D-Glucosamine 6-phosphate transport via phosphate antiport (periplasm) GAP
GGGABADr gamma-glutamyl-gamma aminobutyric acid dehydrogenase GAP
GGGABAH gamma-glutamyl-gamma-aminobutyric acid hydrolase GAP
GGPTRCO gamma glutamyl putrescine oxidase GAP
GGPTRCS gamma glutamyl putrescine synthase GAP
__Ecoli_panGEMs__GHBDHx Gamma-hydroxybutyrate dehydrogenase (NADH) GAP
GLXCL glyoxalate carboligase GAP
GLYBabcpp Glycine betaine transport via ABC system (periplasm) GAP
GLYC2Pabcpp sn-Glycerol 2-phosphate transport via ABC system (periplasm) GAP
GLYC3Pabcpp sn-Glycerol 3-phosphate transport via ABC system (periplasm) GAP
GLYCK glycerate kinase GAP
GLYCTO2 Glycolate oxidase GAP
GLYCTO3 Glycolate oxidase GAP
GLYCTO4 Glycolate oxidase GAP
GTHRDabc2pp glutathione export via ABC system (cytoplasm to periplasm) GAP
GTHS glutathione synthetase GAP
HADPCOADH3 3-hydroxyadipyl-CoA dehydrogenase (NAD+) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
HDCAtexi Hexadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HDCEAtexi Hexadecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
HISTD histidinol dehydrogenase GAP
HMBS hydroxymethylbilane synthase GAP
HOPNTAL 4-hydroxy-2-oxopentanoate aldolase GAP
HPACOAT hydroxyphenylacetyl-CoA thioesterase GAP
HSK homoserine kinase GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
ILEabcpp L-isoleucine transport via ABC system (periplasm) GAP
INOSTO myo-Inositol:oxygen oxidoreductase GAP
IPPMIa 3-isopropylmalate dehydratase GAP
IPPMIb 2-isopropylmalate hydratase GAP
Kabcpp Potassium ABC transporter (periplasm) GAP
LACZ b-galactosidase GAP
LEUabcpp L-leucine transport via ABC system (periplasm) GAP
MALDDH malate decarboxylating oxidoreductase (decarboxylating) GAP
MAN6Pt6_2pp Mannose-6-phosphate transport via phosphate antiport (periplasm) GAP
__Ecoli_panGEMs__MCOATA Malonyl-CoA-ACP transacylase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
MMCD Methylmalonyl-CoA decarboxylase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
__Ecoli_panGEMs__MOCOS Molybdenum cofactor synthase GAP
NADH17pp NADH dehydrogenase (menaquinone-8 & 3 protons) (periplasm) GAP
NADH18pp NADH dehydrogenase (demethylmenaquinone-8 & 3 protons) (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OCDCAtexi Octadecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OCDCEAtexi Octadecenoate (n-C18:1) transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
OXCOAHDH oxepin-CoA hydrolase/ 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase (NADP+) GAP
OXDHCOAT 3-oxo-5,6-dehydrosuberyl-CoA thiolase GAP
P5CD 1-pyrroline-5-carboxylate dehydrogenase GAP
P5CR pyrroline-5-carboxylate reductase GAP
PACCOAE ring 1,2-phenylacetyl-CoA epoxidase (NADPH) GAP
PACCOAL phenylacetate-CoA ligase GAP
PACOAT phenylacetyl-CoA thioesterase GAP
PEAMNOpp Phenethylamine oxidase GAP
PHEMEabcpp protoheme transport via ABC system (periplasm) GAP
PHEtipp L-phenylalanine transport out (periplasm) GAP
PPAt4pp Na+/Propionate symporter (periplasm) GAP
PPC phosphoenolpyruvate carboxylase GAP
PPCK phosphoenolpyruvate carboxykinase GAP
PPCSCT Propanoyl-CoA: succinate CoA-transferase GAP
PPPNDO Phenylpropanoate Dioxygenase GAP
PRAGSr phosphoribosylglycinamide synthase GAP
PROabcpp L-proline transport via ABC system (periplasm) GAP
PROD3 Proline dehydrogenase (q8) GAP
PROGLYabcpp L-Prolinylglycine (Pro-Gly) transport via ABC system (periplasm) GAP
PROt4pp Na+/Proline-L symporter (periplasm) GAP
PSCLYSt2pp psicoselysine transport via proton symport (periplasm) GAP
R15BPK ribose-1,5-bisphosphokinase GAP
REPHACCOAI ring 1,2-epoxyphenylacetyl-CoA isomerase (oxepin-CoA forming) GAP
RPNTPH RPnTP hydrolase GAP
SBTptspp D-sorbitol transport via PEP:Pyr PTS (periplasm) GAP
SELabcpp selenatenate transport via ABC system (periplasm) GAP
SEPHCHCS 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase GAP
SERASr (L-seryl)adenylate synthase GAP
SHGO S-2-hydroxyglutarate oxidase GAP
SLNTabcpp selenite ABC transporter (periplasm) GAP
SOTA Succinylornithine transaminase GAP
SQGH sulfoquinovosidase GAP
SQtex sulphoquinovose transport via diffusion GAP
SQtr sulfoquinovose transporter GAP
SQVOSI sulfoquinovose isomerase GAP
SUCptspp sucrose transport via PEP:Pyr (periplasm) GAP
SULR sulfite reductase (NADPH2) GAP
TAURabcpp taurine transport via ABC system (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
THMabcpp thiamine transport via ABC system (periplasm) GAP
THRabcpp L-threonine transport via ABC system (periplasm) GAP
TRPtipp L-tryptophan transport out (periplasm) GAP
__Ecoli_panGEMs__TSULabcpp Thiosulfate transport via ABC system (periplasm) GAP
TTDCAtexi Tetradecanoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TTDCEAtexi Tetradecenoate transport via facilitated irreversible diffusion (extracellular to periplasm) GAP
TYRL tyrosine lyase GAP
TYROXDApp Tyramine:oxygen oxidoreductase(deaminating)(flavin-containing) (periplasm) GAP
TYRtipp L-tyrosine transport out (periplasm) GAP
__Ecoli_panGEMs__UAGAAT UDP-N-acetylglucosamine acyltransferase GAP
UDPG4E UDPglucose 4-epimerase GAP
UDPGALM UDPgalactopyranose mutase GAP
VALabcpp L-valine transport via ABC system (periplasm) GAP
__Ecoli_panGEMs__WCOS Tungsten pterin cofactor synthase GAP
XYLt2pp D-xylose transport in via proton symport (periplasm) GAP
XYLUt2pp L-xylulose transport in via proton symport (periplasm) GAP