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Gene
GAP
Associated reactions
  BiGG ID Name Gene reaction rule
2DDARAA 2-dehydro-3-deoxy-D-arabinonate Aldolase GAP
__Ecoli_panGEMs__4PCP Tetrapeptide L,D-carboxypeptidase GAP
5DGLCNR 5-dehydro-D-gluconate reductase GAP
5DGLCNt2rpp 5-Dehydro-D-gluconate transport via proton symport, reversible (periplasm) GAP
__Ecoli_panGEMs__AAMYL Alpha-amylase GAP
ABUTD Aminobutyraldehyde dehydrogenase GAP
ACBIPGT Adenosyl cobinamide phosphate guanyltransferase GAP
__Ecoli_panGEMs__ACOAD1fr Acyl-CoA dehydrogenase (butanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD2f Acyl-CoA dehydrogenase (hexanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD3f Acyl-CoA dehydrogenase (octanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD4f Acyl-CoA dehydrogenase (decanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD5f Acyl-CoA dehydrogenase (dodecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD6f Acyl-CoA dehydrogenase (tetradecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD7f Acyl-CoA dehydrogenase (hexadecanoyl-CoA) GAP
__Ecoli_panGEMs__ACOAD8f Acyl-CoA dehydrogenase (octadecanoyl-CoA) GAP
ADOCBIK Adenosyl cobinamide kinase GAP
ADOCBLS Adenosylcobalamin 5'-phosphate synthase GAP
ADOCBLtonex Adenosylcobalimin transport via ton system (extermal) GAP
__Ecoli_panGEMs__AGM4PCP N-Acetyl-D-glucosamine(anhydrous)N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase GAP
AGMT agmatinase GAP
__Ecoli_panGEMs__AM4PCP Anhydrous-N-Acetylmuramyl-tetrapeptide L,D-carboxypeptidase GAP
AMPN AMP nucleosidase GAP
ANPRT anthranilate phosphoribosyltransferase GAP
ANS anthranilate synthase GAP
ARBabcpp L-arabinose transport via ABC system (periplasm) GAP
ARGDCpp arginine decarboxylase GAP
ARGt3pp L-arginine transport out via proton antiport (cytoplasm to periplasm) GAP
ASNNpp L-asparaginase GAP
ASNt2rpp L-asparagine reversible transport via proton symport (periplasm) GAP
ASPtpp L-aspartate uptake via facillitated diffusion GAP
BETALDHx betaine-aldehyde dehydrogenase GAP
BETALDHy betaine-aldehyde dehydrogenase GAP
CA2t3pp calcium (Ca+2) transport out via proton antiport (periplasm) GAP
CBIAT Cobinamide adenyltransferase GAP
CBItonex Cobinamide transport via ton system (extermal) GAP
CBL1tonex Cob(1)alamin transport via ton system (extermal) GAP
CBLAT cob(I)alamin adenosyltransferase GAP
CDPMEK 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase GAP
CHLt3pp choline transport via proton antiport (periplasm) GAP
CHOLD choline dehydrogenase GAP
__Ecoli_panGEMs__CPGNtonex Coprogen transport via ton system (extracellular) GAP
CSND Cytosine deaminase GAP
CSNt2pp cytosine transport in via proton symport (periplasm) GAP
CURR NADPH-dependent curcumin reductase GAP
CYNTAH Cyanate aminohydrolase GAP
CYNTt2pp Cyanate transport via proton symport (periplasm) GAP
CYSabcpp L-cysteine uptake via ABC system (periplasm) GAP
CYSDDS D-cysteine desulfhydrase GAP
__Ecoli_panGEMs__DAAD D-Amino acid dehydrogenase GAP
DGSNt2pp deoxyguanosine transport in via proton symport (periplasm) GAP
DHAPT Dihydroxyacetone phosphotransferase GAP
DHCURR NADPH-dependent dihydrocurcumin reductase GAP
DINSt2pp deoxyinosine transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__DSBAO1 DsbA protein reoxidation reaction (aerobic) GAP
__Ecoli_panGEMs__DSBAO2 DsbA protein reoxidation reaction (anaerobic) GAP
DURIK1 deoxyuridine kinase (ATP:Deoxyuridine) GAP
DXYLTD D-xylonate dehydratase GAP
__Ecoli_panGEMs__ECA4OALpp Enterobacterial common antigen (x4) O-antigen ligase (periplasm) GAP
__Ecoli_panGEMs__FADt FAD transporter, periplasm GAP
FBA3 Sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase GAP
__Ecoli_panGEMs__FE3DCITabcpp Iron transport from ferric-dicitrate via ABC system (periplasm) GAP
__Ecoli_panGEMs__FE3DCITtonex Ferric-dicitrate transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FE3DHBZStonex Ferric 2,3-dihydroxybenzoylserine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FE3HOXtonex Fe(III)hydroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FECRMtonex Ferrichrome transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FEENTERtonex Fe-enterobactin transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FEOXAMtonex Ferroxamine transport via ton system (extracellular) GAP
__Ecoli_panGEMs__FMNt FMN transporter, periplasm GAP
FTHFD formyltetrahydrofolate deformylase GAP
FUMt1pp fumarate transport via diffusion in (periplasm) GAP
G5SD glutamate-5-semialdehyde dehydrogenase GAP
__Ecoli_panGEMs__GALT1 Galactosyltransferase I (LPS core synthesis) GAP
GALt2pp D-galactose transport in via proton symport (periplasm) GAP
GALTptspp Galactitol transport via PEP:Pyr PTS (periplasm) GAP
GCALDD Glycolaldehyde dehydrogenase GAP
GLCt2pp D-glucose transport in via proton symport (periplasm) GAP
__Ecoli_panGEMs__GLCTR2 Glucosyltransferase II (LPS core synthesis) GAP
__Ecoli_panGEMs__GLCTR3 Glucosyltransferase III (LPS core synthesis) GAP
GLU5K glutamate 5-kinase GAP
GLUNpp glutaminase GAP
__Ecoli_panGEMs__GLUTRR Glutamyl-tRNA reductase GAP
GLYBt3pp Glycine betaine transport via proton antiport (periplasm) GAP
GLYOX3 glyoxalase III GAP
GSNt2pp guanosine transport in via proton symport (periplasm) GAP
GTHS glutathione synthetase GAP
GTPCII2 GTP cyclohydrolase II (25drapp) GAP
HCYSMT homocysteine S-methyltransferase GAP
HCYSMT2 Homocysteine Methyltransferase GAP
__Ecoli_panGEMs__HEPK2 LPS heptose kinase II (LPS core synthesis) GAP
__Ecoli_panGEMs__HEPT4 Heptosyltransferase IV (LPS core synthesis) GAP
ICDHyr isocitrate dehydrogenase (NADP) GAP
IDOND L-idonate 5-dehydrogenase GAP
IDOND2 L-indonate 5-dehydrogenase (NADP) GAP
IDONt2rpp L-idonate transport via proton symport, reversible (periplasm) GAP
IGPS indole-3-glycerol-phosphate synthase GAP
INOSTt4pp Na+/myo-inositol symporter (periplasm) GAP
KDOPS 3-deoxy -D-manno-octulosonic -acid 8-phosphate synthase GAP
LALGP L-alanyl-gamma-L-glutamate peptidase GAP
LCADi lactaldehyde dehydrogenase GAP
LCARSyi lacaldehyde reductase (S-propane-1,2-diol forming) GAP
LCTStpp Lactose transport via proton symport (periplasm) GAP
LDGUNPD linear diguanylate phosphodiesterase GAP
MCITD 2-methylcitrate dehydratase GAP
MCITL2 methylisocitrate lyase GAP
MCITS 2-methylcitrate synthase GAP
MEPNabcpp methylpshophonic acid abc transporter GAP
METAT methionine adenosyltransferase GAP
METNA L-amino acid N-acyltransferase GAP
MMCD Methylmalonyl-CoA decarboxylase GAP
MMETt2pp S-methylmethionine permease (periplasm) GAP
MMM Methylmalonyl-CoA mutase GAP
__Ecoli_panGEMs__MOAT3C 3-deoxy-D-manno-octulosonic acid transferase III (LPS core biosynthesis) GAP
NAt3_1p5pp sodium proton antiporter (H:NA is 1.5) (periplasm) GAP
NNDMBRT Nicotinate-nucleotide dimethylbenzimidazole phosphoribosyltransferase GAP
NTPP10 Nucleoside triphosphate pyrophosphorylase (ditp) GAP
NTPP11_1 Nucleoside triphosphate pyrophosphorylase (xtp) GAP
NTPP9_1 Nucleoside triphosphate pyrophosphorylase (itp) GAP
__Ecoli_panGEMs__O16A4Lpp O16 anitgen (x4) ligase (periplasm) GAP
__Ecoli_panGEMs__O16AP1pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP2pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AP3pp O16 antigen polymerase (periplasm) GAP
__Ecoli_panGEMs__O16AT Rhamanosyl-N-acetylglucosamyl-undecaprenyl diphosphate O-acetyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16AUNDtpp O16 antigen (flippase, cytoplasm to periplasm) GAP
__Ecoli_panGEMs__O16GALFT Galactofuranosyltransferase (LPS O16 antigen biosynthesis) GAP
__Ecoli_panGEMs__O16GLCT1 Glucosyltransferase I (LPS O16 antigen biosynthesis) GAP
OMPDC orotidine-5'-phosphate decarboxylase GAP
__Ecoli_panGEMs__PAPA120 Phosphatidate phosphatase (n-C12:0) GAP
__Ecoli_panGEMs__PAPA120pp Phosphatidate phosphatase (periplasmic, n-C12:0) GAP
PAPA140 Phosphatidate phosphatase (n-C14:0) GAP
PAPA140pp Phosphatidate phosphatase (periplasmic, n-C14:0) GAP
__Ecoli_panGEMs__PAPA141 Phosphatidate phosphatase (n-C14:1) GAP
__Ecoli_panGEMs__PAPA141pp Phosphatidate phosphatase (periplasmic, n-C14:1) GAP
PAPA160 Phosphatidate phosphatase (n-C16:0) GAP
PAPA160pp Phosphatidate phosphatase (periplasmic, n-C16:0) GAP
__Ecoli_panGEMs__PAPA161 Phosphatidate phosphatase (n-C16:1) GAP
__Ecoli_panGEMs__PAPA161pp Phosphatidate phosphatase (periplasmic, n-C16:1) GAP
__Ecoli_panGEMs__PAPA180 Phosphatidate phosphatase (n-C18:0) GAP
__Ecoli_panGEMs__PAPA180pp Phosphatidate phosphatase (periplasmic, n-C18:0) GAP
__Ecoli_panGEMs__PAPA181 Phosphatidate phosphatase (n-C18:1) GAP
__Ecoli_panGEMs__PAPA181pp Phosphatidate phosphatase (periplasmic, n-C18:1) GAP
PGK phosphoglycerate kinase GAP
__Ecoli_panGEMs__PGSA120 Phosphatidylglycerol synthase (n-C12:0) GAP
__Ecoli_panGEMs__PGSA140 Phosphatidylglycerol synthase (n-C14:0) GAP
__Ecoli_panGEMs__PGSA141 Phosphatidylglycerol synthase (n-C14:1) GAP
__Ecoli_panGEMs__PGSA160 Phosphatidylglycerol synthase (n-C16:0) GAP
__Ecoli_panGEMs__PGSA161 Phosphatidylglycerol synthase (n-C16:1) GAP
__Ecoli_panGEMs__PGSA180 Phosphatidylglycerol synthase (n-C18:0) GAP
__Ecoli_panGEMs__PGSA181 Phosphatidylglycerol synthase (n-C18:1) GAP
PPCSCT Propanoyl-CoA: succinate CoA-transferase GAP
PPDOy Propane-1,2-diol:NADP+ 1-oxidoreductase GAP
PRAIi phosphoribosylanthranilate isomerase (irreversible) GAP
PRPPS phosphoribosylpyrophosphate synthetase GAP
__Ecoli_panGEMs__RHAT1 Rhamnosyltransferase I (LPS core biosynthesis) GAP
S7PI sedoheptulose 7-phosphate isomerase GAP
SKMt2pp shikimate transport in via proton symport (periplasm) GAP
SUCCt1pp succinate transport via diffusion in (periplasm) GAP
TDPDRE dTDP-4-dehydrorhamnose 3,5-epimerase GAP
TDPDRR dTDP-4-dehydrorhamnose reductase GAP
TEO2M tellurite methyltransferase GAP
TMDK1 thymidine kinase (ATP:thymidine) GAP
TRE6PP trehalose-phosphatase GAP
TRE6PS alpha,alpha-trehalose-phosphate synthase (UDP-forming) GAP
TREHpp alpha,alpha-trehalase (periplasm) GAP
TRPS1 tryptophan synthase (indoleglycerol phosphate) GAP
TRPS2 tryptophan synthase (indole) GAP
TRPS3 tryptophan synthase (indoleglycerol phosphate) GAP
UDPGALM UDPgalactopyranose mutase GAP
__Ecoli_panGEMs__UM4PCP UDP-N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-2,6-diaminopimelate-D-alanine L,D-carboxypeptidase GAP
XPPT xanthine phosphoribosyltransferase GAP